Embryo-scale, single-cell spatial transcriptomics

Massively multiplex chemical transcriptomics at single cell resolution

A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages

Joint profiling of chromatin accessibility and gene expression in thousands of single cells

Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data

Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation

On the design of CRISPR-based single-cell molecular screens

Comprehensive single-cell transcriptional profiling of a multicellular organism

Single-cell mRNA quantification and differential analysis with Census