Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe

A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages

The single-cell transcriptional landscape of mammalian organogenesis

Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome

Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data

The cis-regulatory dynamics of embryonic development at single-cell resolution

Reversed graph embedding resolves complex single-cell trajectories

Comprehensive single-cell transcriptional profiling of a multicellular organism

Single-cell mRNA quantification and differential analysis with Census

Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis