Estimate abundances

Predict cell type abundances given a PLN model and a set of inputs for its covariates

estimate_abundances(
  ccm,
  newdata,
  min_log_abund = -5,
  cell_group = "cell_group",
  scale = c("log", "log10", "log2", "per_1000")
)

Arguments

ccm

A cell_count_model.

newdata

tibble A tibble of variables used for the prediction.

min_log_abund

numeric Minimum log abundance value.

cell_group

string The name of the groups that are being estimated.

scale

Desired log scale for the output. Default is natural log.

Value

A tibble of cell abundance predictions.