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Estimate abundances

Predict cell type abundances given a PLN model and a set of inputs for its covariates

estimate_abundances(ccm, newdata, min_log_abund = -5)

Arguments

ccm

A cell_count_model.

newdata

tibble A tibble of variables used for the prediction.

min_log_abund

numeric Minimum log abundance value.

Value

A tibble of cell abundance predictions.