Estimate abundances over interval

Predict cell type abundances given a PLN model over a range of time or other interval

estimate_abundances_over_interval(
  ccm,
  interval_start,
  interval_stop,
  interval_col = "timepoint",
  interval_step = 2,
  min_log_abund = -5,
  newdata = tibble()
)

Arguments

ccm

A cell_count_model.

interval_start

numeric Interval start value.

interval_stop

numeric Interval stop value.

interval_col

character Interval values are taken from the interval_var data. Default is "timepoint".

interval_step

numeric Interval size. Default is 2.

min_log_abund

numeric Minimum log abundance value.

newdata

tibble Additional covariate values to combine with the interval sequence (cross-joined with each interval value). If it contains the interval_col column, that column is dropped before joining. Defaults to an empty tibble.

Value

A tibble of cell abundance predictions.