Downloads

Here, you'll find the data used in the paper for download so you can explore the data yourself. This data is available under CC-BY-NC.

Reference Atlas

A processed and annotated monocle3 cell_data_set object (.RDS file) containing ~1.3M cells of wild type zebrafish development between 18 and 96 hpf.

Reference data (.RDS)

State graphs

Platt-derived graphs (igraph) for the entire embryo.

State graphs (.RDS)

Literature evidence for edges

Lit evidence (.tsv)

Δlmx1b

A processed and annotated monocle3 cell_data_set object (.RDS file) containing of ~570,000 cells of Δlmx1b and matched controls (ctrl-inj) zebrafish at 18, 24, 36, 48, 60, and 72 hpf.

Δlmx1b data (.RDS)

Δlmx1b abundance tables

Δlmx1b abundance (.tsv)

Δlmx1b DvEGs

Δlmx1b DvEGs (.RDS)