Basic performance

This section assesses accuracy of gene- and isoform-resolution expression calculations as well as power and specificity of Cuffdiff's tests for differential expression, splicing, and promoter switching.

Estimation of expression values in a single condition

Genes

Transcripts

Estimation of expression values between conditions

Genes

Transcripts

True and false positives

DE Genes

DE Transcripts

DE TSS Groups

Differentially Spliced TSS Groups

Promoter Switching Genes