Monocle 3
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  • Introduction
  • Major updates in Monocle 3
  • Installing Monocle 3
  • Getting help
  • Getting started with Monocle 3
  • Pre-process your data
  • Clustering and classifying your cells
  • Constructing single-cell trajectories
  • Differential expression analysis
  • Projecting query data onto a reference
  • Storing monocle objects
  • Disk-based count matrix storage
  • Single-cell ATAC-seq data
  • Additional information
  • Citations and acknowledgments
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  3. Pre-processing

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