Cufflinks Bias Correction paper published

Our new paper on the Cufflinks bias correction method introduced in v0.9.0 has appeared in Genome Biology. The paper describes the details of the method and provides validations for the improvements in expression estimates it produces. As a reminder, bias correction is only activated when a reference sequence (fasta) is supplied with the -r option.

Please cite this paper if using Cufflinks bias correction in your work.