This fix release corrects several issues introduced with 1.0.0:

• The binary packages for 1.0.0 failed to include gtf_to_sam and gffread, causing cuffmerge to fail.
• Cuffdiff’s splicing.diff was missing the q_value column header
• Several portability issues have been fixed (thanks to Nathan Weeks for the patches)
• Cuffmerge’s help message incorrectly listed several options.