Cufflinks 1.0.1 released

This fix release corrects several issues introduced with 1.0.0:

  • The binary packages for 1.0.0 failed to include gtf_to_sam and gffread, causing cuffmerge to fail.
  • Cuffdiff’s splicing.diff was missing the q_value column header
  • Several portability issues have been fixed (thanks to Nathan Weeks for the patches)
  • Cuffmerge’s help message incorrectly listed several options.