Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
Data from this paper are hosted on GEO, accession number GSE109828
Available datasets:
- sci-ATAC-seq of human skeletal muscle myoblast (HSMM) differentiation:
GSM2970930, GSM2970931
- sci-ATAC-seq of mixed GM12878 and HL60:
GSM2970932
- Bulk ATAC-seq of human skeletal muscle myoblast (HSMM) differentiation:
GSM2970933
- Bulk ATAC-seq of human immortalized myoblast (54-1), no template control (NTC), differentiation day 0:
GSM2970934,
GSM2970935,
GSM2970936,
GSM2970937,
GSM2970938
- Bulk ATAC-seq of human immortalized myoblast (54-1) no template control (NTC), differentiation day 7:
GSM2970948,
GSM2970949,
GSM2970950,
GSM2970951,
GSM2970952
- Bulk ATAC-seq of human immortalized myoblast (54-1), MEIS1 knockout, differentiation day 0:
GSM2970939,
GSM2970940,
GSM2970941,
GSM2970942
- Bulk ATAC-seq of human immortalized myoblast (54-1), MEIS1 knockout, differentiation day 7:
GSM2970953,
GSM2970954,
GSM2970955,
GSM2970956
- Bulk ATAC-seq of human immortalized myoblast (54-1), PBX1 knockout, differentiation day 0:
GSM2970943,
GSM2970944,
GSM2970945,
GSM2970946,
GSM2970947
- Bulk ATAC-seq of human immortalized myoblast (54-1), PBX1 knockout, differentiation day 7:
GSM2970957,
GSM2970958,
GSM2970959,
GSM2970960,
GSM2970961