Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

Data from this paper are hosted on GEO, accession number GSE109828

Available datasets:

• sci-ATAC-seq of human skeletal muscle myoblast (HSMM) differentiation:
  GSM2970930, GSM2970931
• sci-ATAC-seq of mixed GM12878 and HL60:
  GSM2970932
• Bulk ATAC-seq of human skeletal muscle myoblast (HSMM) differentiation:
  GSM2970933
• Bulk ATAC-seq of human immortalized myoblast (54-1), no template control (NTC), differentiation day 0:
  GSM2970934, GSM2970935, GSM2970936, GSM2970937, GSM2970938
• Bulk ATAC-seq of human immortalized myoblast (54-1) no template control (NTC), differentiation day 7:
  GSM2970948, GSM2970949, GSM2970950, GSM2970951, GSM2970952
• Bulk ATAC-seq of human immortalized myoblast (54-1), MEIS1 knockout, differentiation day 0:
  GSM2970939, GSM2970940, GSM2970941, GSM2970942
• Bulk ATAC-seq of human immortalized myoblast (54-1), MEIS1 knockout, differentiation day 7:
  GSM2970953, GSM2970954, GSM2970955, GSM2970956
• Bulk ATAC-seq of human immortalized myoblast (54-1), PBX1 knockout, differentiation day 0:
  GSM2970943, GSM2970944, GSM2970945, GSM2970946, GSM2970947
• Bulk ATAC-seq of human immortalized myoblast (54-1), PBX1 knockout, differentiation day 7:
  GSM2970957, GSM2970958, GSM2970959, GSM2970960, GSM2970961